Directory of TAK Group Past and Present

 

KEIDERLING, Timothy A.

Professor of Chemistry (Emeritus), Department of Chemistry, University of Illinois at Chicago

845 West Taylor Street (m/c 111), Chicago IL 60607-7061

E-mail: tak@uic.edu

Office phone: 312-996-3156

FAX: 312-996-0431


For more information click here: Brief CV

 

ALUMNI (PhD graduates)

For thesis abstract, click on date

 

BAELLO, Bernoli

PROTEIN SECONDARY AND TERTIARY STRUCTURE STUDIES USING VIBERATIONAL SPECTROSCOPY AND HYDORGEN EXCHANGE

PhD 2000--Protein spectral analysis-IR&VCD--orig: Secondary teaching, North Shore Prep, Niles IL

E-mail: bibaello@uic.edu

Web: http://www.uic.edu/~bibaello

 

 BOUR, Petr

COMPUTATIONAL STUDY OF THE VIBRATIONAL ACTIVITY OF AMIDES AND PEPTIDES

PhD '83 – actually granted from Czech Acad. Science, based on work there and at UIC

currently: group leader Inst. Organic Chemistry and Biochemistry, Academy of Science, Prague & Instructor -Tech. Univ.Prague

E-mail: bour@ uochb.cas.cz

 

CHI,  Heng – Aurora

Structural Studies of Designed Peptides by Spectroscopic Methods: PPII Helices to Extended Beta-Sheets

PhD 2013, peptide design synthesis, isotopic labeling, equilibrium and dynamic folding studies and aggregation modelling

currently Faculty member in Jiangsu Food and Pharmaceutical Science College – teaching, peptide research in Huai’an, China,

Email: 29563515 <29563515@qq.com>

 

CROATTO, Paul V.

MAGNETIC VIBRATIONAL CIRCULAR DICHROISM OF PORPHYRINS AND SELECTED GAS PHASE MOLECULES

PhD'90--MVCD&instrumentation,

currently: Chemist -- US DOE New Brunswick Lab , (diasarmament, etc.), Argonne, IL

E-mail: paul.croatto@ch.doe.gov

 

DEVINE, Timothy R.

MAGNETIC VIBRATIONAL CIRCULAR DICHROISM: EXPERIMENTAL STUDIES OF THE FARADAY EFFECT IN MOLECULAR VIBRATIONS

PhD'84-MVCD, Orig: US Gypsum, then Product Development -- Convatec Corp. (Bristol Meyers Squibb) ,

curently retired, Whitefish Bay, WI

Home e-mail: trdevine53217@yahoo.com

 

DUKOR, Rina K.

VIBRATIONAL CIRCULAR DICHROISM OF SELECTED PEPTIDES, POLYPEPTIDES AND PROTEINS

PhD'91-Peptide/protein IR-VCD, orig: Amoco, then Product Manager, Bioinformatics -- Vysis, Inc. ,

currently: President: BioTools, Inc. (VCD, ROA and IR products) ( was in Waconda, IL, but now in Jupiter Fl: info@btools.com, http://www.btools.com

(Past National President Society for Applied Spectroscopy, won IR100 award for ROA instrument)

E-mail: rkdukor@aol.com

 

EL-AZHARY, Adel

VIBRATIONAL CIRCULAR DICHROISM OF TRANS-DICYANOCYCLOPROPANE AND TRANS-TETRAHYDROFURAN-3,4-D(2) (TETRAHYDROFURAN)

PhD'90-theory, small molec. VCD, orig:Instructor (on leave) -- University of Cairo, Post-doc -- University of Stuttgart,

currently: Instructor - King Faisal Univ., Saudi Arabia

E-mail: azhary@ksu.edu.sa

 

GE, Ning

STRUCTURE OF b-LACTOGLOBULIN INTERACTING WITH LIPID VSEICLES: A SPECTROSCOPIC AND THERMODYNAMIC STUDY

PhD ’10 – protein- lipid vesicle interaction; investment banking intern in Beijing

E-mail: gening_pku@hotmail.com

 

Hilario, Jovencio 

OPTICAL SPECTROSCOPIC INVESTIGATIONS OF MODEL BETA SHEET PEPTIDES

PhD 2003 – beta hairpin and model sheet characterization

Current: Postdoc at UC Davis, Microbiology with Kowalczykowski Lab looking at protein DNA interaction, Susan Komen Breast Cancer Fellow

e-mail: jhilario@ucdavis.edu

 

HUANG, Rong - peptide folding, isotope effects IR&VCD

INFRARED AND CIRCULAR DICHROISM STUDIES OF CARBON-13 ISOTOPICALLY LABELED PEPTIDE MODELS

PhD 2007 – went to postdoc at Univ. Cincinnati, Med school, doing high density lipo protein studies

e-mail: rhuang3@uic.edu

 

KOZIKOWSKI, Barbara A.

ELECTRONIC SPECTRA OF HEXAHALOGENO COMPLEXES OF OSMIUM(IV), RHENIUM(IV) AND PLATINUM(IV)

PhD'81-MCD & 2-photon Trans. Metals, orig: Staff Chemist -- Procter & Gamble, Miami Valley Lab,

curently P&G Healthcare Research Center (polymers to immounology) retired and moved to SanDiego: Elitra Pharmaceuticals, then switch back to P&G product representation

E-mail: barbkozi@yahoo.com , old: kozikowski.ba@pg.com

 

KUBELKA, Jan

VIBRATIONAL SPECTROSCOPIC STUDIES OF PEPTIDE AND PROTEIN STRUCTURES, THEORY AND EXPERIMENT

PhD 2002--Theory peptide VCD& 2-D Raman and CD, etc.--(SAS National Student Award, 200)

orig: NIH-postdoc, Chem. Phys. Lab NIDDK, Bethesda MD (protein folding and duynamics)

Current: Assoc. Prof. Department of Chemistry, University Wyoming, NSF Career Awardee

e-mail: jkubelka@uwyo.edu
 

Web: http://uwadminweb.uwyo.edu/chemistry/faculty/Kubelka/default.asp

 

LAKHANI,  Ahmed

A New Dispersive Vibrational Circular Dichroism Instrument: Development, Testing, and Application

PhD – 2011, VCD instrument modernization and application to peptides, initially lecturer, UIC,

Currently: Asst. Prof. Calumet College, St. Joseph’s, Whiting, IN –science (chem, phys) teaching, undergrad research

Email: alakhani@ccsj.edu

 

LEE, Sang Chun

SPECTROSCOPIC INVESTIGATION OF TRANSITION METAL COMPLEXES BY USE OF ABSORPTION SPECTROSCOPY AND MULTIPHOTON IONIZATION

PhD'90-molec. beam and crystals, orig: postdoc--U. Tennessee (atomic spec), Iowa State, then Assistant Professor of Chemistry -- Kyung Nam University, Masan, So. Korea

Currently: Professor Kyung Nam (analytical chem), and involved in National K-12 science Education initiative

E-mail: sclee@eros.kyungnam.ac.kr

 

NARAYANAN, Usha

VIBRATIONAL CIRCULAR DICHROISM OF STEROIDS, PEPTIDES AND ALLENES

PhD '87-small molec.(allene) and peptide VCD,

currently: Chemist/Manager--Reference Materials Program, New Brunswick Labs -- US DOE, Argonne, IL

E-mail: usha.narayanan@ch.doe.gov

 

ROY, Anjan

Modeling the Molecular Spectra of Selected Peptides and Development of an Optical Trapping Raman System

PhD 2014, Raman peptides, laser trapping,

currently OPT – initially BioTools, Jupiter, FL, then Ondax, Monrovia, CA, Raman instrumentation 

E-mail: aroy25@gmail.com

 

SILVA, R. A. Gangani D.

PEPTIDE VIBRATIONAL SPECTROSCOPIC STUDIES AS MODELS FOR PROTEIN FOLDING EVENTS

PhD 2000-peptide CD, VCD and IR, hCGb--orig postdoc Mt. Holyoke (peptide folding, model systems),

next U. of Cincinatti, OH, Research Lecturer in Dept. Pathology, College of Medicine, postdoc, then instructor, and now Asst. Prof. with NIH R99 grant

e-mail : silvar@ucmail.uc.edu

 

STELEA, Simona D.

THERMAL DENATURATION OF RIBONUCLEASE A AND RELATED PROTEINS: OPTICAL SPECTROSCOPY AND CALORIMETRY STUDIES

PhD 2002-RNaseA and S folding--

orig product speicalist for Sutter Instr, CA (pipette pullers and filter changers for microscope systems)

E-mail: simona@sutter.com

 

SU, Eric C.N.

MID-INFRARED VIBRATIONAL CIRCULAR DICHROISM AND APPLICATIONS OF THE COUPLED OSCILLATOR MODEL

PhD '82 -small molecule. symmetry,& Instrumental. VCD, orig: (New York company in adhesives)

currently: Research Scientist , Avery Products Cleveland, OH

E-mail: sueric@averydennison.com

 

TAM, Cheok

MOLECULAR ZEEMAN AND NATURAL VIBRATIONAL OPTICAL ACTIVITY STUDIES OF SELECTED MOLECULES

PhD '95-MVCD (gas phase), small molec VCD, orig: Post-doc -- Argonne National Labs (IPNS Division), then, Applications, Bruker Instruments, Billerica, MA

Currentl;y: Hong Kong Government, Staff Scientist, Forensic Science Division

E-mail: "Cheok Tam" cheok_t@hotmail.com
Jimmy Tam Cheok Ning jimmy_tam@ctimail.com

 

VAVRA, Mark

RAMAN OPTICAL ACTIVITY OF SELECTED MOLECULES

PhD '90-ROA small molec, orig: Staff Chemist -- UOP , then Gensym,

curent: East-West U. (Biology professor)

E-mail: mrvavra@uop.com

 

WANG, Baoliang

MAGNETIC VIBRATIONAL CIRCULAR DICHROISM STUDIES OF SELECTED SMALL MOLECULES

PhD'93-MVCD (gas pahse etc), , orig: postdoc UIC-TAK group (instrum. & protein VCD)

currently: Staff Scientist/Engineer -- Hinds Instruments Inc., Hillsboro, OR (developed new instrument for measuring birefringence--IR100 prize winner!)

E-mail: bwang@hindspem.com
websites:
www.exicor.com, <www.hindspem.com>www.hindspem.com

 

WANG, Lijiang

VIBRATIONAL CIRCULAR DICHROISM STUDIES OF NUCLEIC ACID CONFORMATIONS

PhD'93-nuclecic acid VCD, orig: Post-doc -- NIH, NIDDK, Genetics/Biochem (had Science paper), then Bertek Phamaceuticals,Burlington VT,

curerently at IBM Micropocessors, VT (process engineer?)

E-mail: Lijiang Wang lijiangw@yahoo.com,

Email: leewang@us.ibm.com

 

WU, Ling

THERMODYNAMIC AND SPECTRAL STUDIES OF STRUCTURE AND STABILITY FOR RELATED BETA-HAIRPIN PEPTIDES

PhD 2010 – hairpin peptide structure and folding with NMR and optical spectra, thermal studies, initially postdoc and Michigan State, rapid flow mixing protein folding studies

Currently: Boehringer Ingelheim, Analytical Pharma Development, Ridgefield CT – pharma small molecule analysis support

E-mail: ling.wu@boehringer-ingelheim.com

 

XU, Qi

EQUILIBRIUM AND TIME-RESOLVED SPECTROSOCPIC STUDIES ON CYTOCHROME C AND OTHER SELECTED PROTEINS

PhD 2004—looked at folding of acidic Cyt c interact with salt an SDS with CD, fluorescence and IR and VCD, plus Con A with TFE using stop-flow methods

Went to postdoc at Univ. Virginia, with David Cafisco, doing membrane protein studies with EPR, then job with Baxter division: Epic, in Massachusetts

e-mail: qi_xu@baxter.com

 

YODER, Gorm

VIBRATIONAL CIRCULAR DICHROISM OF SELECTED MODEL PEPTIDES

PhD'97-peptide & instr. VCD; orig Steroids, Chicago (analytical, Previously: Scientist, Jordan Pharmaceuticals, Inc.),

currently: Dey Pharmaceuticals (div. Merck?), Napa, CA

E-mail: Gorm.Yoder@deyinc.com

 

YOO, Ryong K.

ELECTRONIC SPECTRA OF SELECTED 5-D-ELECTRON TRANSITION METAL COMPLEXES

PhD'88-trans metal crystal MCD&2-photon, orig postdoc UIC-TAK group instrum&MVCD, then postdoc Argonne (ionization spectra), then Research Assistant Prof.-- Texas Tech, Lubbock

Currently living in Peoria. IL (private business)

E-mail: rkyoo@aol.com

 

ZHANG, Ge

Spectroscopic Studies of Model Protein Interactions with Lipid Vesicles and Insulin Fibril Disassembly

PhD 2015, Protein lipid interaction and fibrilization,

currently OPT-postdoc – model membrane protein characterization, Bioengineering UIC

Email: gzhang25@uic.edu

 

ZHU, Weiying

PhD 2015, reduced protein lipid refolding interactions,

currently: TA and job hunt

Email: wzhu3@uic.edu

 

OTHER Student Members

 

HEINTZ, Vic - MS UIC, left for Staff Scientist Xerox Corp., retired, doing computing consulting and exploring a second career in science teaching

E-mail: vheintz@rochester.rr.com

web site: http://www.geocities.com/Heartland/Hills/3822/index_vh.html

 

HUANG, Zhihua - MS UIC(?), homemaker / western suburbs

 

HUO, Dongfang - MS UIC (?), PhD UIUC (Food Chemistry ?) --

 

KAPITAN, Josef- returned to Prague, finish PhD at Charles Univ. 2005-06,with Vladimir Baumruk, then Postdoc Glasgow, with Laurence Barron,

Current: lecturer Optics, Univ. Olomouc, Czech

 

MICKLEY, Loretta- BS,MS-UIC--PhD 1996 U. Chicago, Atmospheric Science,

now staff at Harvard U., Meterology--Atmospheric Physics

 

PAHIGIANNIS, Irene - MS UIC- left for position at Searle

 

SOURIGES, Ann-Marie - thesis MS UIC (small molec. VCD) - The vibrational circular dichroism of 2,2'-disubstituted-1,1'-binapthyls

--orig: IBM Printer Div. Paris, then Ricoh, France

 

STERN, Regan -MS(?) --in EECS-UIC, in computer consultation(?)

E-mail: rstern1@uic.edu

 

Tobias, Fernando (Ralph) - MS UIC 2015, modelling peptide aggregation fibril formation

Email: ftobia2@uic.edu

 

 TEWOLDE, Tewolde Siele – transferred to Med Chem

e-mail: ttewol2@uic.edu

 

Trinh, Toan  - MS UIC, 2015, peptide synthesis

 

 Wei, Yue - MS UIC, 2014 vibrational computations, now student UIC Biostatistics

Email: ywei20@uic.edu

 

WI, Sungsool - Switch to Freidman group, PhD UIC, postdoc Berkeley, Nat. Mag. Lab, VirginiaTech

Currently: Florida State, National Magnet Lab.

E-mail: u32239@uic.edu

 

YANG, Ligang--MS UIC (RNA VCD), orig: Morgan Stanley's Global High Yields New York

E-mail: Leon Yang, lyang@ms.com (?)

 

Undergrads:

Dana Alrahmahi –BS biochem 2015, undergad res.,  –job seeking

Saad Chaudry – BS biochem 2013, undergad res., - Med School, Caribbean

Hong Nguyen (Kim) –BS biochem 2014, undergad res., - Med Chem Midwestern- Pharmacy

Heewhan Shin – BS biohem 2013, undergad res.,, current: UIC grad stud. Chem.

Long Nguyen - BS biochem 2014, undergad res., - UIC Pharmacy

Schultz, Bill - BS UIC, 1980?undergrad res., M.D. UIC Med School, Rockford

Fearon, Maureen - BS/MS UIC, 1980? undergrad res., M.D., Loyola Med. School, Chicago

 

 

 

POSTDOCS

 

ANNAMALAI, A.(80s)—VCD measurement and theoretical modeling, early QM methods, small molecules and RNA

left UIC for DuPont, Delaware; then UOP California, then a start-up and consulting,

now Principal Biostatistician at Wyeth BioPharma, Andover, MA.  

**E-mail: annamalai_a@hotmail.com, aannamalai@wyeth.com

 

BOUR, Petr (see PhD)—QM theoretical modeling of VCD for small molecules and peptides, returned as postdoc and several times after as a visitor

 currently: Group Leader Inst. Organic Chemistry and Biochemistry, Academy of Science, Prague & Instructor -Technical Univ.Prague

E-mail: bour@uochb.cas.cz

 

GUPTA, Vijai Prakash -- Peptide, Protein spectral studies

Assoc. Professor, Department of Physics, Lucknow University, INDIA

e-mail: "vijai prakash gupta" vijaipgupta1@rediffmail.com 

 

 KIM, Joohyunsenior postdoc 2004-, quantum and molecular dynamics calculations of peptides

Went to NCSA for a year, for Web based Chemical computing,  then moved to Research Staff, LSU Computer Center, Baton Rouge

e-mail: jhkim@cct.lsu.edu

 

NAKAEMA, Marcelo – peptide dynamics, folding, biomarker detection with nanocrystals

First to: Asst. Professor Physics, Universidade Federal de Alfenas, Brazil , now: now Federal University of Rio Grande do Norte (UFRN) in Natal,

e-mail: mkknakaema@gmail.com

 

PAWLIKOWSKI, Marek (~1983) theoretical studies of magnetic VCD and vibronic coupling

returned to permanent position and rose to Professor, and was Chair, Department Theoretical chemistry Jagellonian University Krakow, Poland

e-mail: pawlikow@wuch.ch.uj.edu.pl

 

SEN, Asok (~82-84) VCD studies of peptides

then moved to Eye Research Institute, Boston, (90s) later to Hospira

Email: asok.sen8@gmail.com

 

SETNICKA, Vladimir – postdoc 2002-03, explores large series of b-hairpin peptides,

returned to lecturer position at Chemical Technical University in Prague, and collaboration with Marie Urbanova

e-mail: Vladimi.Setnicka@vscht.cz

 

SINGH, Ram Deo (~78-80) – first postdoc, VCD studies of small molecules and first peptide VCD

left for graphics computing. Notre Dame, then Schlumberger in Houston, GE Schnectedy, then at HP in CA, Lead, Graphics and GUI Research Embedded Software Operation

E-mail: voxels@hotmail.com 

 

SLUIS, Kathleen (~90)—small molecule VCD modeling

left for staff position -- U.S. EPA, Chicago

E-mail: sluis.kathleen@epamail.epa.gov (?)

 

Tibudan,  Martin (Sr. Tech.) from UIC Medical Center, Biochemical analyses with antibody labeled nanoparticle Raman, now U of C Transplant research Technician

Email: tibudan@uchicago.edu

 

TISSOT, Marie-Claire (~91-92)- small molecule VCD modeling

return Fribourg University, Computer Center, now teaching in a school

Email: marieclaire.tissot@bluewin.ch

 

WANG, Baoliang (1994, see PhD ALUMNI) Protein VCD as a postdoc

 

WANG, Zhenjia (2007-2008) – SERS setup and applications with early nanoparticles

moved to UIC Pharmcology, doing imaging studies,  worked on biomarker project with SERS

Currently: Washington State U. Pharmacy, Asst. Prof.

e-mail: zhenjia.wang@wsu.edu

 

YASUI, Sritana (Mid 80s)—Initial extended studies of peptides and proteins with VCD and cycloalkane VCD (isotope labeled)

left for FDA position in Cincinnatti, now in Boca Raton, FL, first private business and then high school teaching,

Email: syasui@broward.edu

 

YOO, Ryong K. (see PhD ALUMNI)

 

ZHANG, Xiuqi (2004-06) – senior postdoc in group for 2 years, did beginnings of membrane interaction studies in the group, moved to Cho group, 2006, then in 2009 moved to UIC Biology. Undertook degree in Biostatistics

e-mail: Xiuqi65@gmail.com

 

 

SENIOR VISITORS (long stay)

 

BAUMRUK, Vladimir (90s)- returned to Physicist -- Charles University, now Associate Professor

E-mail: Baumruk@NS.KARLOV.MFF.CUNI.CZ or PRAUS@CSPGUKII

 

MALON, Petr -(late 80s) return peptide group leader, Inst. Organic and Biochemistry, Czech Academy of Science, Prague; since retired, doing research at Charles Univ. with Vladimir Baumruk

E-mail: pmalon@email.cz

 

PANCOSKA, Petr- UIC (late 80's) return to Physics, Charles University, Prague then 1994 came to UIC again as Res. Assoc. Prof. (teaching several courses & res),

after 1999, continued collaboration with Benight group and private companies,

then moved to SUNY Stoney Brook, College of Medicine, Dept. Pathology doing Bioinformatics, now Univ. Pittsburgh, Medical school, Bioinformatics

E-mail: petr.pancoska@gmail.com

 

URBANOVA, Marie (early 90s)-return Charles Univ., now: Prof. BioPhysics, and Assoc. Dean-- Institute of Chemical Technology Prague

E-mail: Marie.Urbanova@vscht.cz

 

TAKEKIYO, Takahiro (2007-08) – sabbatical at UIC, hairpin peptide spectra, methods, thermal studies, returned to positon at Defense Academy of Japan— now Assoc. Prof.,

e-mail: take214@nda.ac.jp

 

 

PRESENT Group members