FA/RMR - Principal Component Factor
Analysis/Restricted Multiple
Regression Program
- decomposition of the spectral data set into principal components
- prediction of secondary structure by restricted multiple regression
Program files (WinZipped) download
Installation/Execution hints
ASCII text format download
MS Word 97 documentdownload
|
Protein Training Data Sets
(WinZipped ASCII 2-column format)
- ECD data set
download
-
FTIR (in H2O) data set
download
-
FTIR (in D2O) data set
download
(Note: samples incompletely H-D exchanged
- to equilibrium)
-
VCD (in H2O) data set
download
-
VCD (in D2O) data set
download
(Note: samples incompletely H-D exchanged
- to equilibrium)
Code names, PDB codes and origins of
proteins in the training sets.
(Warning! Each data set does NOT contain
all proteins listed in the table!!!)
|
Protein Name
|
Codea |
Species
|
Source
|
PDB
|
|
Alcohol dehydrogenase
|
ALDE
|
Horse liver
|
Fluka 05648
|
8ADH
|
|
Carbonic anhydrase
|
CRAN
|
Bovine erythrocytes
|
Sigma C-3934
|
1CA2
|
|
a-Chymotrypsinogen
A
|
CHYGN
|
Bovine pancreas
|
Sigma C-4879
|
2CGA
|
|
a -Chymotrypsin
type II
|
CHYSIN
|
Bovine pancreas
|
Sigma C-4129
|
5CHA
|
|
Concanavalin A
|
CONVA
|
Jack bean
|
Sigma C-2010
|
3CON
|
|
Cytochrome C
|
CYTOC
|
Bovine heart
|
Sigma C-3131
|
3CYT
|
|
Tosyl elastase
|
ELAT
|
Pig porcine pancreas
|
Sigma E-0127
|
3EST
|
|
Glutathione reductase
|
GLUR
|
Wheat germ
|
Sigma G-6004
|
3GRS
|
|
Hemoglobin
|
HMGL
|
Human
|
Sigma H-7379
|
1HCO
|
|
l-Immunoglobulin
|
IMUN
|
Human
|
Fluka 56834
|
1REI
|
|
a-
Lactalbumin
|
LAC
|
Human milk
|
Sigma L 7269
|
1A4V
|
|
Lactate dehydrogenase
|
LADE
|
Rabbit
|
Calbiochem 427217
|
6LDH
|
|
Lysozyme
|
LYSO
|
Hen egg white
|
Sigma L-6876
|
7LYZ
|
|
Myoglobin
|
MYO
|
Horse skeletal muscle
|
Sigma M-0682
|
1MBN
|
|
Papain
|
PAPA
|
Papaya latex
|
Sigma P-4762
|
8PAP
|
|
Ribonuclease A
|
RIBOA
|
Bovine
|
Sigma R-5125
|
3RN3
|
|
Ribonuclease S
|
RIBOS
|
Bovine pancreas
|
Sigma R-6000
|
2RNS
|
|
Rhodenase
|
RHODA
|
Bovine liver
|
Sigma R-4125
|
1RHD
|
|
Subtilisin BPN'
|
SUBTI
|
Bacterial
|
Sigma P-8038
|
1SBT
|
|
Superoxide dismutase
|
SUPDI
|
Bovine erythrocytes
|
Fluka 86200
|
2SOD
|
|
Thermolysin
|
THE
|
Bacterial
|
Sigma P-1512
|
2TLN
|
|
Triose phosphate isomerase
|
RIAS
|
Yeast
|
Sigma T-2507
|
1TIM
|
|
Trypsin
|
TRYS
|
Bovine pancreas
|
Sigma T-8253
|
3PTN
|
|
Trypsin inhibitor
|
TRYI
|
Soybean
|
Sigma T-9003
|
1AVU
|
|
Albumin
|
ALB
|
Bovine serum
|
Sigma A-0281
|
-
|
|
a-Casein
|
CAS
|
Bovine milk
|
Sigma C-7891
|
-
|
|
Lactoferrin
|
LCF
|
Human milk
|
Sigma L-0520
|
-
|
|
b -Lactoglobulin
A
|
LCTG
|
Bovine milk
|
Sigma L-7880
|
-
|
| aFor example ECD spectrum for Concanavalin A is UCONA.PRN
|
|