Peptides Publications Ordered by Year
Higlighted titles link to abstracts
Some recent articles are on-line; see Links page for journal websites
Numbers match publication list
R-review article or chapter
C-published required conference proceedings paper
19. "Vibrational Circular Dichroism of Poly alpha-Benzyl-L-Glutamate," R. D. Singh, and T. A. Keiderling, Biopolymers, 20, 237-40 (1981).
32. "Vibrational Circular Dichroism of Polypeptides II. Solution Amide II and Deuteration Results," A. C. Sen and T. A. Keiderling, Biopolymers, 23, 1519-32 (1984).
33. "Vibrational Circular Dichroism of Polypeptides III. Film Studies of Several alpha-Helical and ß-Sheet Polypeptides," A. C. Sen and T. A. Keiderling, Biopolymers, 23, 1533-46 (1984).
38. "Vibrational Circular Dichroism of Polypeptides IV. Film Studies of L-Alanine Homo Oligopeptides," U. Narayanan, T. A. Keiderling, G. M. Bonora, and C. Toniolo, Biopolymers 24, 1257-63 (1985).
C 42. "Vibrational Circular Dichroism of Polypeptides, T. A. Keiderling, S. C. Yasui, A. C. Sen, C. Toniolo, G. M. Bonora, in Peptides Structure and Function, Proceedings of the 9th American Peptide Symposium," ed. C. M. Deber, K. Kopple, V. Hruby; Pie rce Chemical: Rockford, IL; 167-172 (1985).
40. "Vibrational Circular Dichroism of Polypeptides V. A Study of 310 Helical-Octapeptides" S. C. Yasui, T. A. Keiderling, G. M. Bonora, C. Toniolo, Biopolymers 25, 79-89 (1986).
41. "Vibrational Circular Dichroism of Polypeptides VI. Polytyrosine alpha-helical and Random Coil Results," S. C. Yasui and T. A. Keiderling, Biopolymers 25, 5-15 (1986).
44. "Vibrational Circular Dichroism of Polypeptides VII. Film and Solution Studies of alpha-forming Homo-Oligopeptides," U. Narayanan, T. A. Keiderling, G. M. Bonora, C. Toniolo, Journal of the American Chemical Society, 108, 2431-2437 (1986).
45. "Vibrational Circular Dichroism of Polypeptides VIII. Poly Lysine Conformations as a Function of pH in Aqueous Solution," S. C. Yasui, T. A. Keiderling, Journal of the American Chemical Society, 108, 5576-5581 (1986).
47. "Vibrational Circular Dichroism of Polypeptides IX. A Study of Chain Length Dependence for 310-Helix Formation in Solution." S. C. Yasui, T. A. Keiderling, F. Formaggio, G. M. Bonora, C. Toniolo, Journal of the American Chemical Society 108, 4988-499 3 (1986).
R 48. "Vibrational Circular Dichroism of Biopolymers." T. A. Keiderling, Nature, 322, 851-852 (1986).
53. "Vibrational Circular Dichroism of Polypeptides X. A Study of alpha-Helical Oligopeptides in Solution." S. C. Yasui, T. A. Keiderling, R. Katachai, Biopolymers 26, 1407-1412 (1987).
56. "Vibrational Circular Dichroism of Polypeptides XI. Conformation of Poly(L-Lysine(Z)-L-Lysine(Z)-L-1-Pyrenylalanine) and Poly(L-Lysine(Z)-L-Lysine(Z)-L-1-Napthylala-nine) in Solution" S. C. Yasui, T. A. Keiderling, and M. Sisido, Macromolecules 20, 2 403-2406 (1987).
RC60. "Vibrational Circular Dichroism of Biopolymers" T. A. Keiderling, S. C. Yasui, A. C. Sen, U. Narayanan, A. Annamalai, P. Malon, R. Kobrinskaya, L. Yang, in "F.E.C.S. Second International Conference on Circular Dichroism, Conference Proceedings," ed. M. Kajtar, L. Eötvös Univ., Budapest, 1987, p. 155-161.
C58. "Vibrational Circular Dichroism of Poly-L-Proline and Other Helical Poly-peptides," R. Kobrinskaya, S. C. Yasui, T. A. Keiderling, in "Peptides: Chemistry and Biology, Proceedings of the 10th American Peptide Symposium," ed. G. R. Marshall, ESCOM, L eiden, 1988, p. 65-67.
C59. "Vibrational Circular Dichroism of Polypeptides with Aromatic Side Chains," S. C. Yasui, T. A. Keiderling, in "Peptides: Chemistry and Biology, Proceedings of the 10th American Peptide Symposium," ed. G. R. Marshall, ESCOM, Leiden, 1988, p. 90-92.
63. "Vibrational Circular Dichroism of Polypeptides XII. Re-evaluation of the Fourier Transform Vibrational Circular Dichroism of Poly-gamma-Benzyl-L-Glutamate," P. Malon, R. Kobrinskaya, T. A. Keiderling, Biopolymers 27, 733-746 (1988).
C64. "Vibrational Circular Dichroism of Biopolymers," T. A. Keiderling, S. C. Yasui, U. Narayanan, A. Annamalai, P. Malon, R. Kobrinskaya, L. Yang, in "Spectroscopy of Biological Molecules New Advances" ed. E. D. Schmid, F. W. Schneider, F. Siebert, p. 73-76 (1988).
C65. "Vibrational Circular Dichroism of Polypeptides and Proteins," S. C. Yasui, T. A. Keiderling, Mikrochimica Acta, II, 325-327, (1988).
71. "(1R,7R)-7-Methyl-6,9,-Diazatricyclo[6,3,0,01,6]Tridecanne-5,10-Dione, A Tricyclic Spirodilactam Containing Non-planar Amide Groups: Synthesis, NMR, Crystal Structure, Absolute Configuration, Electronic and Vibrational Circular Dichroism" P. Malon, C . L. Barness, M. Budesinsky, R. K. Dukor, D. van der Helm, T. A. Keiderling, Z. Koblicova, F. Pavlikova, M. Tichy, K. Blaha, Collections of Czechoslovak Chemical Communications 53, 2447-2472 (1988).
C72. "Vibrational Circular Dichroism of Poly Glutamic Acid" R. K. Dukor, T. A. Keiderling, in "Peptides 1988" (ed. G. Jung, E. Bayer) Walter de Gruyter, Berlin (1989) pp 519-521.
C73. "Biopolymer Conformational Studies with Vibrational Circular Dichroism" T. A. Keiderling, S. C. Yasui, P. Pancoska, R. K. Dukor, L. Yang, SPIE Proceeding 1057, ("Biomolecular Spectroscopy," ed. H. H. Mantsch, R. R. Birge) 7-14 (1989).
RC80. "Application of Vibrational Circular Dichroism to Synthetic Polypeptides and Polynucleic Acids" T. A. Keiderling, S. C. Yasui, R. K. Dukor, L. Yang, Polymer Preprints 30, 423-424 (1989).
R74. "Vibrational Circular Dichroism. Comparison of Techniques and Practical Considerations" T. A. Keiderling, in "Practical Fourier Transform Infrared Spectroscopy. Industrial and Laboratory Chemical Analysis," ed. J. R. Ferraro, K. Krishnan (Academic P ress, San Diego, 1990) p. 203-284.
89. "Vibrational Circular Dichroism Study of Unblocked Proline Oligomers," R. K. Dukor, T. A. Keiderling, V. Gut, International Journal of Peptide and Protein Research, 38, 198-203 (1991).
97. "Reassessment of the Random Coil Conformation. Vibrational CD Study of Proline Oligopeptides and Related Polypeptides" R. K. Dukor and T. A. Keiderling, Biopolymers 31 1747-1761 (1991).
100. "Vibrational CD of the Amide II band in Some Model Polypeptides and Proteins" V. P. Gupta, T. A. Keiderling, Biopolymers 32 239-248 (1992).
108. "Vibrational Circular Dichroism Studies of Epidermal Growth Factor and Basic Fibroblast Growth Factor" R. K. Dukor, P. Pancoska, S. Prestrelski, T. Arakawa, T. A. Keiderling Archives of Biochemistry and Biophysics 298 678-681 (1992).
R99. "Vibrational Circular Dichroism of Proteins Polysaccharides and Nucleic Acids" T. A. Keiderling, Chapter 8 in "Physical Chemistry of Food Processes, Vol. 2 Advanced Techniques, Structures and Applications" ed. I. Baianu, H. Pessen, T. Kumosinski, Va n Norstrand Reinhold, New York (1993) pp 307-337.
R112. "Structural Studies of Biological Macromolecules using Vibrational Circular Dichroism" T. A. Keiderling, P. Pancoska, Chapter 6 in Advances in Spectroscopy Vol. 21, "Biomolecular Spectroscopy Part B" ed. R. E. Hester, R. J. H. Clarke, John W iley Chichester (1993) pp 267-315.
114. "Ab Initio Simulations of the Vibrational Circular Dichroism of Coupled Peptides" P. Bour and T. A. Keiderling, Journal of the American Chemical Society 115 9602-9607 (1993).
C116. "Ab initio Simulations of Coupled Peptide Vibrational Circular Dichroism" P. Bour, T. A. Keiderling in "Fifth International Conference on The Spectroscopy of Biological Molecules" Th. Theophanides, J. Anastassopoulou, N. Fotopoulos (Eds), Kluwen Aca demic Publ., Dortrecht, 1993, p. 29-30.
R125. "Vibrational Circular Dichroism Spectroscopy of Peptides and Proteins" T. A. Keiderling, in "Circular Dichroism Interpretations and Applications," K. Nakanishi, N. Berova, R. Woody, Eds., VCH Publishers, New York, (1994) pp 497-521.
128. "Conformational Study of Sequential Lys-Leu Based Polymers and Oligomers using Vibrational and Electronic Circular Dichroism Spectra" V. Baumruk, D. Huo, R. K. Dukor, T. A. Keiderling, D. LeLeivre and A. Brack Biopolymers 34, 1115-1121 (1994).
R132. "Vibrational Optical Activity of Oligopeptides" T. B. Freedman, L. A. Nafie, T. A. Keiderling Biopolymers (Peptide Science) 37 (ed. C. Toniolo) 265-279 (1995).
133. "Characterization of ß-bend ribbon spiral forming peptides using electronic and vibrational circular dichroism" G. Yoder, T. A. Keiderling, F. Formaggio, M. Crisma, C. Toniolo Biopolymers 35, 103-111 (1995).
C136. "Vibrational Circular Dichroism as a Tool for Determination of Peptide Secondary Structure" P. Bour, T. A. Keiderling, P. Malon, in "Peptides 1994 (Proceedings of the 23rd European Peptide Symposium, Braga 1994," (H.L.S. Maia, ed.), Escom, Le iden 1995, p.517-518.
137. "Helical Screw Sense of homo-oligopeptides of C-alpha-methylated alpha-amino acids as Determined with Vibrational Circular Dichroism." G. Yoder, T. A. Keiderling, M. Crisma, F. Formaggio, C. Toniolo, J. Kamphuis, Tetrahedron Assymmetry 6, 687 -690 (1995).
138. "Conformational Study of Linear Alternating and Mixed D- and L-Proline Oligomers Using Electronic and Vibrational CD and Fourier Transform IR." W. Mästle, R. K. Dukor, G. Yoder, T. A. Keiderling Biopolymers 36, 623-631 (1995).
R139. "Vibrational Circular Dichroism Applications to Conformational Analysis of Biomolecules" T. A. Keiderling in "Circular Dichroism and the Conformational Analysis of Biomolecules" ed G. D. Fasman, Plenum, New York (1996) p. 555-598
149. "Mutarotation studies of Poly L-Proline using FTIR, Electronic and Vibrational Circular Dichroism" R. K. Dukor, T. A. Keiderling, Biospectroscopy 2, 83-100 (1996)
C162. "Vibrational Circular Dichroism Applications in Proteins and Peptides" T. A. Keiderling, Proceedings of the NATO ASI in Biomolecular Structure and Dynamics, Loutrakii Greece, May 1996, Ed. G. Vergoten (delayed second volume to 1998)
171. "Conformational characterization of terminally blocked L-(alpha-Me)-Val homopeptides using vibrational and electronic circular dichroism. 310 helical stabilization by peptide-peptide interaction," Gorm Yoder, Timothy A. Keiderling, Alessandra Polese, Fernando Formaggio, Marco Crisma, Claudio Toniolo, Johan Kamphuis, Quirinus Broxterman Journal of the American Chemical Society 119, 10 278-10285 (1997)
160. "Transfer of Molecular Property Tensors in Cartesian Coordinates: A new algorithm for simulation of vibrational spectra" Petr Bour, Jana Sopkova, Lucie Bednarova, Petr Malon, T. A. Keiderling, Journal of Computational Chemistry 18, 6 46-659 (1997)
C167. "Vibrational Circular Dichroism Characteriz ation of Alanine-Rich Peptides." Gorm Yoder and Timothy A. Keiderling, "Spectroscopy of Biological Molecules: Modern Trends," Ed. P. Carmona, R. Navarro, A. Hernanz, Kluwer Acad. Pub., Netherlands (1997) p p. 27-28
1998
1. "Ionic strength effect on the thermal unfolding of alpha-spectrin peptides." D. Lusitani, N. Menhart, T.A. Keiderling and L. W. M. Fung. Biochemistry 37(1998)16546-16554.
1999
C174. "In search of the earliest events of hCGb folding: structural studies of the 60-87 peptide fragment" S. Sherman, L. Kirnarsky, O. Prakash, H. M. Rogers, R.A.G.D. Silva, T.A. Keiderling, D. Smith, A.M. Hanly, F. Perini, and R.W. Ruddon, American Pep tide Symposium Proceedings, 1997 (submitted)
C175. "Vibrational and Electronic Circular Dichroism Study of 310-Helical Stabilization in Blocked (alpha-Me)-Val Based Peptides" Gorm Yoder, T. A. Keiderling, Alessandra Polese, Fernando Formaggio, Marco Crisma, Claudio Toniolo, Q. B. Broxterman and Johan Kamphuis, American Peptide Symposium Proceedings, 1997 (submitted)
C176. "Cold Denaturation Studies of (LKELPKEL)n Peptide Using Vibrational Circular Dichroism and FTIR". R. A. G. D. Silva, Vladimir Baumruk, Petr Pancoska, T. A. Keiderling, Eric Lacassie, and Yves Trudelle, American Peptide Symposium Proceedings, 1997 (submitted)
2000
188. "Simulations of oligopeptide vibrational CD. Effects of isotopic labeling." Petr Bour, Jan Kubelka,T. A. Keiderling Biopolymers 53, 380-395 (2000)
193. "Site specific conformational determination in thermal unfolding studies of helical peptides using vibrational circular dichroism with isotopic substitution" R. A. G. D. Silva, Jan Kubelka, Petr Bour, Sean M. Decatur, Timothy A. Keiderling, Proceedings of the National Academy of Sciences (USA) 97, 8318-8323 (2000)
194. "Folding studies on the human chorionic gonadotropin b -subunit using optical spectroscopy of peptide fragments" R. A. G. D. Silva, S. A. Sherman, F. Perini, E. Bedows, T. A. Keiderling, Journal of the American Chemical Society, 122, 8623-8630 (2000)
R 186. "Peptide and Protein Conformational Studies with Vibrational Circular Dichroism and Related Spectroscopies", Timothy A. Keiderling, (Revised and Expanded Chapter) In Circular Dichroism: Principles and Applications, 2nd Edition. (Eds. K. Nakanishi, N. Berova and R. A. Woody, John Wiley & Sons, New York (2000) p. 621-666
C 190. "Conformation studies with Optical Spectroscopy of peptides taken from hairpin sequences in the Human Chorionic Gonadotropin " R. A. G. D. Silva, S. A. Sherman, E. Bedows, T. A. Keiderling, Peptides for the New Millenium, Proceedings of the 16th American Peptide Symposium, (June, 1999 Minneapolis, MN) Ed.G. B. Fields, J. P. Tam, G. Barany, Kluwer Acad. Pub., Dordrecht,(2000) p. 325-326
C 191. "Analysis of Local Conformation within Helical Peptides via Isotope-Edited Vibrational Spectroscopy." S. M. Decatur, T. A. Keiderling, R. A. G. D.Silva, and P. Bour, Peptides for the New Millenium, Proceedings of the 16th American Peptide Symposium, (June, 1999 Minneapolis, MN) Ed. Ed.G. B. Fields, J. P. Tam, G. Barany, Kluwer Acad. Pub., Dordrecht, (2000) p. 414-416
2001
196. "The anomalous infrared amide I intensity distribution in 13C isotopically labeled peptide b-sheets comes from extended, multiple stranded structures. An Ab Initio study." Jan Kubelka and T. A. Keiderling , Journal of the American Chemical Society. . 123, 6142-6150 (2001)
200. "Differentiation of b-sheet forming structures: ab initio-based simulations of IR absorption and vibrational CD for model peptide and protein b-sheets" Jan Kubelka and T. A. Keiderling, Journal of the American Chemical Society. 123, 12048-12058 (2001).
Erratum: J. Am. Chem. Soc. 123, 8163 (2001)
R 189. "Vibrational Circular Dichroism of Peptides and Proteins: Survey of Techniques, Qualitative and Quantitative Analyses, and Applications" Timothy A. Keiderling, Chapter in Infrared and Raman Spectroscopy of Biological Materials, Ed. Bing Yan and H.-U. Gremlich, Marcel Dekker, New York (2001) p.55-100.
202. "Chirality in peptide vibrations. Ab initio computational studies of length, solvation, hydrogen bond, dipole coupling and isotope effects on vibrational CD. " Jan Kubelka, Petr Bour, R. A. Gangani D. Silva, Sean M. Decatur, Timothy A. Keiderling, ACS Symposium Series 810, ["Chirality: Physical Chemistry," (Ed. Janice Hicks) American Chemical Society, Washington, DC] (2002), pp. 50-64
203. "Spectroscopic Characterization of Selected b-Sheet Hairpin Models", J. Hilario, J. Kubelka, F. A. Syud, S. H. Gellman, and T. A. Keiderling. Biopolymers (Biospectroscopy) 67: 233-236 (2002)
204. " Discrimination between peptide 310- and a-helices. Theoretical analysis of the impact of a-methyl substitution on experimental spectra " Jan Kubelka, R. A. Gangani D. Silva, and T. A. Keiderling, Journal of the American Chemical Society, 124, 5325-5332 (2002)
205. "Ab Initio Quantum Mechanical Models of Peptide Helices and their Vibrational Spectra" Petr Bour, Jan Kubelka and T. A. Keiderling, Biopolymers 65, 45-59 (2002)
209. " Discriminating 310- from a-helices. Vibrational and electronic CD and IR Absorption study of related Aib-contining oligopeptides" R. A. Gangani D. Silva, Sritana Yasui, Jan Kubelka, Fernando Formaggio, Marco Crisma, Claudio Toniolo, and Timothy A. Keiderling, Biopolymers 65, 229-243 (2002)
R 207. "Spectroscopic characterization of Unfolded peptides and proteins studied with infrared absorption and vibrational circular dichroism spectra" T. A. Keiderling and Qi Xu, Advances in Protein Chemistry Volume 62, [Unfolded Proteins, Dedicated to John Edsall, Ed.: George Rose, Academic Press:New York] (2002) pp. 111-161.
R 208. " Protein and Peptide Secondary Structure and Conformational Determination with Vibrational Circular Dichroism " Timothy A. Keiderling, Current Opinions in Chemical Biology (Ed. Julie Leary and Mark Arnold) 6, 682-688 (2002)
R 192. “Conformational Studies of Peptides with Infrared Techniques” Timothy A. Keiderling and R. A. G. D. Silva, in Synthesis of Peptides and Peptidomimetics, Ed. M. Goodman and G. Herrman, Houben-Weyl, Vol 22Eb, Georg Thiem Verlag, New York (2002) pp. 715-738. (Actually written and accepted in 2000)
2003
211. "Spectroscopic Studies of Structural Changes in Two b-Sheet Forming Peptides Show an Ensemble of Structures That Unfold Non-Cooperatively" Serguei V. Kuznetsov, Jovencio Hilario, T. A. Keiderling, Anjum Ansari, Biochemistry, 42 :4321-4332, (2003)
212. " Optical spectroscopic investigations of model b-sheet hairpins in aqueous solution" Jovencio Hilario, Jan Kubelka, T. A. Keiderling, Journal of the American Chemical Society 125, 7562-7574 (2003)
213. "Synthesis and conformational study of homopeptides based on (S)-Bin, a C2-symmetric binapthyl-derived Caa-disubstituted glycine with only axial chirality" J.-P. Mazaleyrat, K. Wright, A. Gaucher, M. Wakselman, S. Oancea, F. Formaggio, C. Toniolo, V. Setnicka, J. Kapitan, T. A. Keiderling, Tetrahedron Asymmetry, 14, 1879-1893 (2003)
215. "Empirical modeling of the peptide amide I band IR intensity in water solution," Petr Bour, Timothy A. Keiderling, Journal of Chemical Physics, 119, 11253-11262 (2003)
2004
218. "The Nature of Vibrational Coupling in Helical Peptides: An Isotope Labeling Study” by R. Huang, J. Kubelka, W. Barber-Armstrong, R. A. G. D Silva, S. M. Decatur, and T. A. Keiderling, Journal of the American Chemical Society, 126, 2346-2354 (2004)
219. "The Complete Chirospectroscopic Signature of the Peptide 310 Helix in Aqueous Solution" Claudio Toniolo, Fernando Formaggio, Sabrina Tognon, Quirinus B. Broxterman, Bernard Kaptein, Rong Huang, Vladimir Setnicka, Timothy A. Keiderling, Iain H. McColl, Lutz Hecht, Laurence D. Barron, Biopolymers 75, 32-45 (2004)
221. "Induced axial chirality in the biphenyl core for the Ca-tetrasubstituted a-amino acid residue Bip and subsequent propagation of chirality in (Bip)n/Val oligopeptides" J.-P. Mazaleyrat, K. Wright, A. Gaucher, N. Toulemonde, M. Wakselman, S. Oancea, C. Peggion, F. Formaggio, V. Setnicka, T. A. Keiderling, C. Toniolo, Journal of the American Chemical Society 126; 12874-12879 (2004).
2005
223. “Ab initio modeling of amide I coupling in anti-parallel b-sheets and the effect of the 13C isotopic labeling on vibrational spectra” Petr Bour, Timothy A. Keiderling, Journal of Physical Chemistry B, 109, 5348-5357 (2005)
224. “Solvent Effects on IR And VCD Spectra of Helical
Peptides: Insights from Ab Initio Spectral Simulations with Explicit Water” Jan
Kubelka and Timothy A. Keiderling, Journal of Physical Chemistry B 109, 8231-8243 (2005)
225. “IR Study of Cross-Strand Coupling in a beta-Hairpin Peptide Using Isotopic Labels”, Vladimir Setnicka, Rong Huang, Catherine L. Thomas, Marcus A. Etienne, Jan Kubelka, Robert P. Hammer, Timothy A. Keiderling Journal of the American Chemical Society 127, 4992-4993 (2005)
227. “Vibrational
spectral simulation for peptides of mixed secondary structure: Method comparisons with the trpzip
model hairpin.” Petr Bour and
Timothy A. Keiderling, Journal of Physical Chemistry B 109, 232687-23697 (2005)
228.
“Isotopically labeled peptides provide site-resolved
structural data with infrared spectra. Probing the structural limit of optical
spectroscopy,” Timothy A. Keiderling, Rong Huang, Jan
Kubelka, Petr Bour, Vladimir Setnicka, Robert P. Hammer, Marcus A. Etienne, R.
A. Gangani D. Silva, Sean M. Decatur Collections Symposium Series,
8, 42-49 (2005)—[“Biologically Active
Peptides” IXth Conference, Prague Czech Republic, April 20-22, 2005]
2006
231. “Contribution of Transition Dipole Coupling to Amide Coupling in IR Spectra of Peptide Secondary Structures,” Jan Kubelka, Joohyun Kim, Petr Bour, and Timothy A. Keiderling Vibrational Spectroscopy (ICAVS issue) (2006, in press)
232."Simulation of IR Spectra for b-hairpin peptides stabilized by an Aib-Gly turn sequence: Correlation between conformational fluctuation and vibrational coupling" Joohyun Kim, T. A. Keiderling, (submitted for publication)